Welcome to the forums!
To answer your question. No. that wouldn't cause your brake drag necessarily.
There is nothing fundamentally wrong with pushing in the outer pistons without opening the bleed valve.
But when I saw the phrase that you quoted, I was initially surprised by it. I had to go and find it in the text to see it in context.
Looking at the tone of those two paragraphs, I was trying to warn people away from doing things without thinking of the consequences.
When first working on the brakes, I don't think many people consider what is happening or where the fluid goes.
The circuit to the rear outer pistons is the longest, most complex circuit that exists on the ST1300. There is a lot of resistance to pushing in the rear outer pistons. Eventually, the fluid returns to the rear brake fluid reservoir. If that gets full, there will be problems,
Why would it become full ? Well, it shouldn't, unless someone has topped up the fluid some time after the current set of brake pads were fitted when new. In that case, it will become full.
I didn't want the Avoid the Pitfalls article to be about the SMC - although I added a couple of pages about it. It was more to do with what can go wrong when fitting the calipers and pads.
So rather than explaining everything, and going off into a massive detour, I simply made that statement. It is true, it flags up a warning, but it explains nothing about the hows and whys of potential SMC issues and caliper bracket issues.
The dragging rear brake could be due to many things - many of which are mentioned in the article.
It could be due to :
Mis-aligned caliper bracket - look for spiral fluting in the caliper bracket stopper bolt hole
SMC - not moving and releasing properly
Front left brake dragging slightly due to not following front wheel installation procedure
Front left Caliper pistons not releasing
Slider pins or pad pins on rear or on front left caliper
Crud in the brake lines blocking free movement of fluid.
Pads and pad springs fitted incorrectly.
the list goes on
I would
Test the front brakes first....
Apply front brake lever hard. Spin the front wheel. See if it drags.
Apply the rear brake hard. Spin the front wheel (yes front). See if it drags.
If the front left caliper drags, it will activate the SMC and make the rear calipr drag even harder.
So the front left caliper dragging could be the cause of the rear drag. Eliminate that possibility first.
Do the SMC check. Spin the rear wheel. See how much drag there is.
Apply the SMC by hand. The rear wheel should lock. The SMC should move only 1-2 mm. Push it forward towards the fork leg.
The rear wheel should release when the SMC releases.
If it doesn't then there is likely an issue with the SMC
But it is hard to diagnose the SMC as the cause of the drag if the rear caliper is the cause.
Its an old bike. Mine is one if the last models made - a A9 model built Sep 2013 - and it is still an old bike.
At some point the SMC and the calipers are going to need service / replacement. Mine is 8.5 years old and it has had new seals on all calipers, one new piston and a new (precautionary) SMC.
I would be thinking that I may have to service the rear caliper and maybe replace the SMC at this point.
What you don't want is someone who has never worked with the Honda combined braking and SMC to be doing a trial and error fix.
Have they serviced the bike over the years? I wonder if they flushed out the SMC, tilted it and exercised it when they replaced fluids.
Let me think more about this. It could do with a conversation to find out how confident you are with spanners and fluids.
If he has time,
@Igofar may get in touch. If he does get back to him. He will probably send a private message. You're new to the forum so you may need to find out where to look.
So I have just sent one to give you a heads up.