I've probably got the least experience with an ST compared to anyone but the suspense is killing me, can't stop myself, no self control so here goes, wondering that you mention in your first post plugs looked okay, wet and you had spark, also you can hear the pump prime so that's gas, also you said you verified spark at each plug I read my 03 manual and it suggests checking compression at some point. I wouldn't suspect so since you rode it last and a bad pocket or misfire likely won't go unnoticed on a four banger.
I had a couple times with mine where it seems as though I flooded it, only had it a couple times, left if alone for ten minutes then started it up and forgot about it. I'm wondering if you've got too much fuel at start and once your plugs are wet you're flogging a dead horse for the next however minutes.