Well, I said it will make it easier, not easy!
BTW, how cold is your working area? That will effect how tightly they are held in place.
When I removed the '04#2 throttlebodies the first time, they were held in there pretty tight. You might need a bigger prybar. Mine was about 18" long and it did take some pressure to break them free. Just don't use a hammer or anything to wack the prybar. You could use a large rubber mallet, tap down LIGHTLY on a small piece of wood, sitting on the throttlebodies, that might help break the bond between the two parts.
Even the 2x4 method could have the same issue of trying to break them free from the boots.
More pictures...
Okay, this is a side view of where you are prying, look right under, there is another area that you can pry at that has a little more meat to it.
Here are some old boots I have floating around, trust me, they are as hard as rock! Some heat just might soften them up enough. Remember, these are at least 16 years old rubber!
Sorry the pictures are not crystal clear...