I wish I could give you a definitive answer but unfortunately I can not. I can not recall anyone having done this and what the result was, nor can I test this as my ST1300 is still hibernating.
It is not very complicated to test yourself. If I had a desire to do this I would disconnect the line to the canister and run it to open atmosphere as well as disconnect the plug to the purge control solenoid. Then just ride it around like that for a while and see what happens. If it does throw a code and/or complain in any other way simply connect everything back up, no harm no foul. If you do not observe any adverse effects or symptoms and are happy with the result you will have your answer. If you do this come back and report the results here for our benefit.
Because other versions of the ST1300 don't have the canister system can't be in and of itself the sole motivation for doing this, there must some other reason. Unless the system is defective in some way there does not seem to be any tangible advantage to removing it. People will continue to try to understand what the motivation is, so you will probably keep getting asked why.