The rear brake system is complex. The fluid goes from the rear brake pedal to the rear centre piston. That bit is easy to understand - but it is not a closed circuit. It gets its fluid fromt he same place, through the same hole in the rear master cylinder as the other very long circuit.
That goes from the rear pedal.
Forward to the front right hand fork where it splits. One line goes to the front right centre piston.
The other line goes to the front left centre piston.
From the front left centre piston it take a very short journey to the SMC inlet.
From the SMC outlet it goes back up the fork leg, across the mudguard, up to a bleed valve near your right knee and down to the two rear outer pistons.
You have to work through the sequence in the correct order. If your front brakes are bled and working fine, you do not have to touch the top bleed valve on either of the front calipers. Neither do you have to open up the front brake lever fluid reservoir. Everything is done with the brake pedal and the rear reservoir.
The entire system will feel soft with just a couple of air bubbles in it. You have to build up a mental image of where the air bubbles are hiding and chase them out at the next bleed valve.
So you might find this link very useful.
Download the pdf and watch the video of plastic tubes and water with black ink. It helps to understand how bubbles can get stuck.
Take it steady.
Article [13] - ST1300 - Brake Maintenance - Getting all the air out of the brake system | ST1300 Articles | ST-Owners.com